Mutation bias reflects natural selection in Arabidopsis thaliana
J. Grey Monroe, Thanvi Srikant, Pablo Carbonell-Bejerano, Claude Becker, Mariele Lensink, Moises Exposito-Alonso, Marie Klein, Julia Hildebrandt, Manuela Neumann, Daniel Kliebenstein, Mao-Lun Weng, Eric Imbert, Jon Ågren, Matthew T. Rutter, Charles B. Fenster & Detlef Weigel. 2022. Mutation bias reflects natural selection in Arabidopsis thaliana. Nature
The population genomics of adaptive loss of function
Monroe JG, McKay JK, Weigel D and Flood P. 2021. The population genomics of adaptive loss of function. Heredity
Mutation bias shapes gene evolution in Arabidopsis thaliana
Monroe JG, Srikant T, Carbonell-Bejerano P, Exposito-Alonso M, Weng M, Rutter MT., Fenster CB. and Weigel D. 2020. Mutation bias shapes gene evolution in Arabidopsis thaliana. BioRxiv
Trait plasticity and covariance along a continuous soil moisture gradient
Monroe JG, Cai H, Des Marais DL. 2020. Trait plasticity and covariance along a continuous soil moisture gradient. BioRxiv
The lowest hanging fruit: Beneficial gene knockouts in past, present, and future crop evolution.
Monroe JG, Arciniegas JP, Moreno JL, Sánchez F, Sierra S, Valdes S, Torkamaneh D, Chavarriaga P. 2020. The lowest hanging fruit: Beneficial gene knockouts in past, present, and future crop evolution. Current Plant Biology
Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response.
Baggs EL, Monroe JG, Thanki AS, O’Grady R, Schudoma C, Haerty W, Krasileva KV. 2020. Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response. The Plant Cell.
AraPheno and the AraGWAS Catalog 2020: A major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.
Togninalli M, Serren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. 2019. AraPheno and the AraGWAS Catalog 2020: A major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana. Nucleic Acids Research
An open source database for the synthesis of soil radiocarbon data: ISRAaD version 1.0.
Lawrence C, Beem-Miller J, Hoyt A, Monroe JG, 29 others. 2019. An open source database for the synthesis of soil radiocarbon data: ISRAaD version 1.0. Earth System Data Sicence
Learning from dynamic traits: Seasonal shifts and ecophysiological tradeoffs across scales from macroevolutionary to intra-individual.
Mason CM, Lascaleia M, De La Pascual D, Monroe JG, Goolsby EW. 2019. Learning from dynamic traits: Seasonal shifts and ecophysiological tradeoffs across scales from macroevolutionary to intra-individual . International Journal of Plant Sciences
Drought regimens predict life history strategies in Heliophila.
Monroe JG, Gill B, Turner KT, McKay JK. 2019. Drought regimens predict life history strategies in Heliophila. New Phytologist
Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function.
Monroe JG, Powell T, Price N, Howard A, Evans K, Mullen JL, Lovell JT, McKay JK. 2018. Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function. eLife
Natural variation in stomata size contributes to the local adaptation of water‐use efficiency in Arabidopsis thaliana
Dittberner H, Korte A, Mettler‐Altmann T, Weber APM, Monroe JG, de Meaux J. 2018. Natural variation in stomata size contributes to the local adaptation of water‐use efficiency in Arabidopsis thaliana. Molecular Ecology
The importance of growing up: juvenile environment influences dispersal of individuals and their neighbors
Endriss SB, Vahsen ML, Bitume EV, Monroe JG, Turner KG, Norton AP, Hufbauer RA. 2018. The importance of growing up: juvenile environment influences dispersal of individuals and their neighbors. Ecology Letters
Combining population genomics and fitness QTL to identify the genetics of local adaptation in Arabidopsis thaliana
Price N, Moyers BT, Lasky JR, Monroe JG, Mullen JL, Lopez L, Oakley CG, Lin J, Ågren J, Schrider DR, Kern AD, McKay JK. 2018. Combining population genomics and fitness QTL to identify the genetics of local adaptation in Arabidopsis thaliana. PNAS
Eco-evolutionary dynamics of carbon cycling in the Anthropocene.
Monroe JG, Markman DW, Beck WS, Felton AJ, Vahsen ML, Pressler Y. 2018. Eco-evolutionary dynamics of carbon cycling in the Anthropocene. Trends in Ecology and Evolution
TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps.
Monroe JG, Allen ZA, Tanger P, Mullen JL, Lovell JT, Moyers BT, Whitley D, McKay JK. 2017. TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. BioData Mining
Positive selection in rapidly evolving plastid-nuclear enzyme complexes
Rockenbach K, Havrid JC, Monroe JG, Triant DA, Taylor DR, Sloan DB. 2016. Positive selection in rapidly evolving plastid-nuclear enzyme complexes. Genetics
Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana
Monroe JG, McGovern C, Lasky J, Beck J, Grogan K, McKay JK. 2016. Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana. Molecular Ecology
Genetics of water use physiology in locally adapted Arabidopsis thaliana
Mojica JP, Mullen J, Lovell JT, Monroe JG, Paul JR, Oakley CG, McKay JK. 2016. Genetics of water use physiology in locally adapted Arabidopsis thaliana. Plant Science
Molecular and systems approaches toward drought-tolerant canola crops
Zhu M, Monroe JG, Suhail Y, Villiers F, Mullen J, Pater D, Hauser F, Jeon BW, Bader JS, Kwak JM, Schroeder JI, McKay JK, Assman SM. 2016. Molecular and systems approaches toward drought-tolerant canola crops. New Phytologist