Mutation bias reflects natural selection in Arabidopsis thaliana

J. Grey Monroe, Thanvi Srikant, Pablo Carbonell-Bejerano, Claude Becker, Mariele Lensink, Moises Exposito-Alonso, Marie Klein, Julia Hildebrandt, Manuela Neumann, Daniel Kliebenstein, Mao-Lun Weng, Eric Imbert, Jon Ågren, Matthew T. Rutter, Charles B. Fenster & Detlef Weigel. 2022. Mutation bias reflects natural selection in Arabidopsis thaliana. Nature

The population genomics of adaptive loss of function

Monroe JG, McKay JK, Weigel D and Flood P. 2021. The population genomics of adaptive loss of function. Heredity

Mutation bias shapes gene evolution in Arabidopsis thaliana

Monroe JG, Srikant T, Carbonell-Bejerano P, Exposito-Alonso M, Weng M, Rutter MT., Fenster CB. and Weigel D. 2020. Mutation bias shapes gene evolution in Arabidopsis thaliana. BioRxiv

Trait plasticity and covariance along a continuous soil moisture gradient

Monroe JG, Cai H, Des Marais DL. 2020. Trait plasticity and covariance along a continuous soil moisture gradient. BioRxiv

The lowest hanging fruit: Beneficial gene knockouts in past, present, and future crop evolution. 

Monroe JG, Arciniegas JP, Moreno JL, Sánchez F, Sierra S, Valdes S, Torkamaneh D, Chavarriaga P. 2020. The lowest hanging fruit: Beneficial gene knockouts in past, present, and future crop evolution. Current Plant Biology

Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response. 

​Baggs EL, Monroe JG, Thanki AS, O’Grady R, Schudoma C, Haerty W, Krasileva KV. 2020. Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response. The Plant Cell.

AraPheno and the AraGWAS Catalog 2020: A major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.​ 

Togninalli M, Serren Ü, Freudenthal JA, Monroe JG, Meng D, Nordborg M, Weigel D, Borgwardt K, Korte A, Grimm DG. 2019. AraPheno and the AraGWAS Catalog 2020: A major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.​ Nucleic Acids Research

An open source database for the synthesis of soil radiocarbon data: ISRAaD version 1.0.

Lawrence C, Beem-Miller J, Hoyt A, Monroe JG, 29 others. 2019. An open source database for the synthesis of soil radiocarbon data: ISRAaD version 1.0. Earth System Data Sicence

Learning from dynamic traits: Seasonal shifts and ecophysiological tradeoffs across scales from macroevolutionary to intra-individual.

Mason CM, Lascaleia M, De La Pascual D, Monroe JG, Goolsby EW. 2019. Learning from dynamic traits: Seasonal shifts and ecophysiological tradeoffs across scales from macroevolutionary to intra-individual . International Journal of Plant Sciences

Drought regimens predict life history strategies in Heliophila.

Monroe JG, Gill B, Turner KT, McKay JK. 2019. Drought regimens predict life history strategies in Heliophila. New Phytologist

Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function.

Monroe JG, Powell T, Price N, Howard A, Evans K, Mullen JL, Lovell JT, McKay JK. 2018. Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function. eLife

Natural variation in stomata size contributes to the local adaptation of water‐use efficiency in Arabidopsis thaliana

Dittberner H, Korte A, Mettler‐Altmann T, Weber APM, Monroe JG, de Meaux J. 2018. Natural variation in stomata size contributes to the local adaptation of water‐use efficiency in Arabidopsis thaliana. Molecular Ecology

The importance of growing up: juvenile environment influences dispersal of individuals and their neighbors 

Endriss SB, Vahsen ML, Bitume EV, Monroe JG, Turner KG, Norton AP, Hufbauer RA. 2018. The importance of growing up: juvenile environment influences dispersal of individuals and their neighbors. Ecology Letters

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Combining population genomics and fitness QTL to identify the genetics of local adaptation in Arabidopsis thaliana

Price N, Moyers BT, Lasky JR, Monroe JG, Mullen JL, Lopez L, Oakley CG, Lin J, Ågren J, Schrider DR, Kern AD, McKay JK. 2018. Combining population genomics and fitness QTL to identify the genetics of local adaptation in Arabidopsis thaliana. PNAS

Eco-evolutionary dynamics of carbon cycling in the Anthropocene. 

Monroe JG, Markman DW, Beck WS, Felton AJ, Vahsen ML, Pressler Y. 2018. Eco-evolutionary dynamics of carbon cycling in the Anthropocene. Trends in Ecology and Evolution

TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. 

Monroe JG, Allen ZA, Tanger P, Mullen JL, Lovell JT, Moyers BT, Whitley D, McKay JK. 2017. TSPmap, a tool making use of traveling salesperson problem solvers in the efficient and accurate construction of high-density genetic linkage maps. BioData Mining

Positive selection in rapidly evolving plastid-nuclear enzyme complexes

Rockenbach K, Havrid JC, Monroe JG, Triant DA, Taylor DR, Sloan DB. 2016. Positive selection in rapidly evolving plastid-nuclear enzyme complexes. Genetics

Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana

Monroe JG, McGovern C, Lasky J, Beck J, Grogan K, McKay JK. 2016. Adaptation to warmer climates by parallel functional evolution of CBF genes in Arabidopsis thaliana.  Molecular Ecology

Genetics of water use physiology in locally adapted Arabidopsis thaliana

Mojica JP, Mullen J, Lovell JT, Monroe JG, Paul JR, Oakley CG, McKay JK. 2016. Genetics of water use physiology in locally adapted Arabidopsis thaliana. Plant Science

Molecular and systems approaches toward drought-tolerant canola crops

Zhu M, Monroe JG, Suhail Y, Villiers F, Mullen J, Pater D, Hauser F, Jeon BW, Bader JS, Kwak JM, Schroeder JI, McKay JK, Assman SM. 2016. Molecular and systems approaches toward drought-tolerant canola crops. New Phytologist